All functions
|
|
HOMER_motifs
|
HOMER Database of Motifs |
|
check_homer()
|
Check for working HOMER installation |
|
.parse_homer_subfields()
|
Parse HOMER subfields |
|
find_motifs_genome()
|
Find Motifs over Regions |
|
find_motifs_instances()
|
Find Instances of Motifs Across Regions |
|
get_homer_bin()
|
Get the base installation directory of HOMER |
|
list_homer_packages()
|
List installed/available HOMER packages |
|
read_denovo_html_results()
|
Read de novo enriched motifs from HOMER .info.html output files |
|
read_denovo_results()
|
Read Denovo Enriched Motifs HOMER Output |
|
read_known_results()
|
Read Known Enriched Motifs HOMER output |
|
read_motif()
|
Read HOMER Motif Files |
|
read_motifs_instances()
|
Read Instances of Motifs Across Regions |
|
write_homer_motif()
|
Write Motif PWM in HOMER format |